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1

Vocabulary of Definitions of Life Suggests a Definition

Trifonov, Edward N.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2011

Language:

english

File:

PDF, 174 KB

english, 2011

2

Flowering buds of globular proteins: transpiring simplicity of protein organization

Igor N. Berezovsky, Edward N. Trifonov

Journal:

Comparative and Functional Genomics

Year:

2002

Language:

english

File:

PDF, 512 KB

english, 2002

3

Elucidating Sequence Codes: Three Codes for Evolution

EDWARD N. TRIFONOV

Journal:

Annals of the New York Academy of Sciences

Year:

1999

File:

PDF, 936 KB

1999

4

Loop Fold Structure of Proteins: Resolution of Levinthal's Paradox

Berezovsky, Igor N., Trifonov, Edward N.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2002

Language:

english

File:

PDF, 204 KB

english, 2002

5

The Triplet Code From First Principles

Trifonov, Edward N.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2004

Language:

english

File:

PDF, 423 KB

english, 2004

6

Definition of Life: Navigation through Uncertainties

Trifonov, Edward N.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2012

Language:

english

File:

PDF, 214 KB

english, 2012

7

Multiple levels of meaning in DNA sequences, and one more

Edward N. Trifonov, Zeev Volkovich, Zakharia M. Frenkel

Journal:

Annals of the New York Academy of Sciences

Year:

2012

Language:

english

File:

PDF, 509 KB

english, 2012

8

Nucleosome positioning rules: Soft and hard disagreements: Reply to comments on “Cracking the chromatin code: Precise rule of nucleosome positioning” by Edward N. Trifonov

Edward N. Trifonov

Journal:

Physics of Life Reviews

Year:

2011

Language:

english

File:

PDF, 95 KB

english, 2011

9

Origin and evolution of genes and genomes. Crucial role of triplet expansions

Frenkel, Zakharia M., Trifonov, Edward N.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2012

Language:

english

File:

PDF, 343 KB

english, 2012

10

Walking through protein sequence space

Zakharia M. Frenkel, Edward N. Trifonov

Journal:

Journal of Theoretical Biology

Year:

2007

Language:

english

File:

PDF, 232 KB

english, 2007

11

Early Detection of G + C Differences in Bacterial Species Inferred from the Comparative Analysis of the Two Completely SequencedHelicobacter pyloriStrains

Matthew Bellgard, David Schibeci, Edward Trifonov, Takashi Gojobori

Journal:

Journal of Molecular Evolution

Year:

2001

Language:

english

File:

PDF, 913 KB

english, 2001

12

Apoptotic cleavage of DNA in human lymphocyte chromatin shows high sequence specificity

Bettecken, Thomas, Frenkel, Zakharia M., Altmüller, Janine, Nürnberg, Peter, Trifonov, Edward N.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2012

Language:

english

File:

PDF, 281 KB

english, 2012

13

Back to Units of Protein Folding

Berezovsky, Igor N., Trifonov, Edward N.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2002

Language:

english

File:

PDF, 209 KB

english, 2002

14

Curved DNA: Design, Synthesis, and Circularization

Levy Ulanovsky, Mordechai Bodner, Edward N. Trifonov and Mordechai Choder

Journal:

Proceedings of the National Academy of Sciences

Year:

1986

Language:

english

File:

PDF, 994 KB

english, 1986

15

Yeast Nucleosome DNA Pattern: Deconvolution from Genome Sequences of S. cerevisiae

Cohanim, Amir B., Kashi, Yechezkel, Trifonov, Edward N.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2005

Language:

english

File:

PDF, 866 KB

english, 2005

16

Human nucleosomes: special role of CG dinucleotides and Alu-nucleosomes

Thomas Bettecken, Zakharia M Frenkel, Edward N Trifonov

Journal:

Year:

2011

Language:

english

File:

PDF, 463 KB

english, 2011

17

Protein folding: Looping from hydrophobic nuclei

Igor N. Berezovsky, Valery M. Kirzhner, Alla Kirzhner, Edward N. Trifonov

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2001

Language:

english

File:

PDF, 203 KB

english, 2001

18

Hidden ancient repeats in DNA: Mapping and quantification

Frenkel, Zakharia M., Barzily, Zeev, Volkovich, Zeev, Trifonov, Edward N.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.28 MB

english, 2013

19

Imported sequences in the mitochondrial yeast genome identified by nucleotide linguistics

Pietrokovski, Shmuel, Trifonov, Edward N.

Journal:

Year:

1992

Language:

english

File:

PDF, 1.09 MB

english, 1992

20

Excessive Clustering of Third Codon Position Pyrimidines in Prokaryotes

Rapoport, Alexandra E., Trifonov, Edward N.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2008

Language:

english

File:

PDF, 614 KB

english, 2008

21

CCAAT Box Revisited: Bidirectionality, Location and Context

Bucher, Philipp, Trifonov, Edward N.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1988

Language:

english

File:

PDF, 323 KB

english, 1988

22

Terminators of Transcription with RNA Polymerase from Escherichia coli: What They Look Like and How to Find Them

Brendel, Volker, Hamm, Greg H., Trifonov, Edward N.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1986

Language:

english

File:

PDF, 940 KB

english, 1986

23

On Nussinov's compilation of eukaryotic transcription initiation sites

Philipp Bucher, Edward N. Trifonov

Journal:

Journal of Theoretical Biology

Year:

1987

Language:

english

File:

PDF, 138 KB

english, 1987

24

Nucleosome DNA sequence structure of isochores

Zakharia M Frenkel, Thomas Bettecken, Edward N Trifonov

Journal:

Year:

2011

Language:

english

File:

PDF, 906 KB

english, 2011

25

An Eye-Opener to Protein Structures

Berezovsky, Igor N., Kirzhner, Alla, Kirzhner, Valery M., Trifonov, Edward N.

Journal:

Year:

2003

Language:

english

File:

PDF, 150 KB

english, 2003

26

Overlapping Messages and Survivability

Ofer Peleg, Valery Kirzhner, Edward Trifonov, Alexander Bolshoy

Journal:

Journal of Molecular Evolution

Year:

2004

Language:

english

File:

PDF, 260 KB

english, 2004

27

Sequence-Dependent Kinks Induced in Curved DNA

McNamara, Peter T., Bolshoy, Alexander, Trifonov, Edward N., Harrington, Rodney E.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1990

Language:

english

File:

PDF, 638 KB

english, 1990

28

Periodic Recurrence of Methionines: Fossil of Gene Fusion?

Eugene Kolker and Edward N. Trifonov

Journal:

Proceedings of the National Academy of Sciences

Year:

1995

Language:

english

File:

PDF, 304 KB

english, 1995

29

Periodical Distribution of Transcription Factor Sites in Promoter Regions and Connection with Chromatin Structure

Ilya Ioshikhes, Edward N. Trifonov and Michael Q. Zhang

Journal:

Proceedings of the National Academy of Sciences

Year:

1999

Language:

english

File:

PDF, 1.14 MB

english, 1999

30

Protein Sequence Modules

Aharonovsky, Elik, Trifonov, Edward N.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2005

Language:

english

File:

PDF, 875 KB

english, 2005

31

Base pair stacking in nucleosome DNA and bendability sequence pattern

Edward N. Trifonov

Journal:

Journal of Theoretical Biology

Year:

2010

Language:

english

File:

PDF, 134 KB

english, 2010

32

Estimation of wedge components in curved DNA

Ulanovsky, Levy E., Trifonov, Edward N.

Journal:

Year:

1987

File:

PDF, 344 KB

1987

33

The features ofDrosophilacore promoters revealed by statistical analysis

Naum I Gershenzon, Edward N Trifonov, Ilya P Ioshikhes

Journal:

Year:

2006

Language:

english

File:

PDF, 478 KB

english, 2006

34

Early Molecular Evolution

Trifonov, Edward N.

Journal:

Israel Journal of Ecology and Evolution

Year:

2006

Language:

english

File:

PDF, 389 KB

english, 2006

35

Towards clarity in a very complex matter

Trifonov, Edward N.

Journal:

Physics of Life Reviews

Year:

2013

Language:

english

File:

PDF, 58 KB

english, 2013

36

Jon Widom, the Scientist

Trifonov, Edward N., Zhurkin, Victor B.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2011

Language:

english

File:

PDF, 91 KB

english, 2011

37

22 Text segmentation approach reveals simple repeat “fossils” in genomic sequences

Frenkel, Zakharia M., Trifonov, Edward N.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2013

Language:

english

File:

PDF, 165 KB

english, 2013

38

Three Sequence Rules for Chromatin

Cohanim, Amir B., Kashi, Yechezkel, Trifonov, Edward N.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2006

Language:

english

File:

PDF, 463 KB

english, 2006

39

Spelling Protein Structure

Berezovsky, Igor N., Kirzhner, Alla, Kirzhner, Valery M., Trifonov, Edward N.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2003

Language:

english

File:

PDF, 792 KB

english, 2003

40

Encyclopedia of Life Sciences || Genetic Code: Evolution

Trifonov, Edward N

Year:

2001

Language:

english

File:

PDF, 84 KB

english, 2001

41

Spectral Analysis of Distributions: Finding Periodic Components in Eukaryotic Enzyme Length Data

Kolker, Eugene, Tjaden, Brian C., Hubley, Robert, Trifonov, Edward N., Siegel, Andrew F.

Journal:

Omics A Journal of Integrative Biology

Year:

2002

Language:

english

File:

PDF, 176 KB

english, 2002

42

Universal full-length nucleosome mapping sequence probe

Tripathi, Vijay, Salih, Bilal, Trifonov, Edward N.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2015

Language:

english

File:

PDF, 562 KB

english, 2015

43

Nucleosome Positioning Patterns Derived from Human Apoptotic Nucleosomes

Frenkel, Zakharia M., Trifonov, Edward N., Volkovich, Zeev, Bettecken, Thomas

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2011

Language:

english

File:

PDF, 1.30 MB

english, 2011

44

Transcription factors operate TATA-switches via rotational remodeling of local columnar chromatin structure

Trifonov, Edward N.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2016

Language:

english

File:

PDF, 428 KB

english, 2016

45

Sequence periodicity ofEscherichia coliis concentrated in intergenic regions

Sergey Hosid, Edward N Trifonov, Alexander Bolshoy

Journal:

BMC Molecular Biology

Year:

2004

Language:

english

File:

PDF, 1.02 MB

english, 2004

46

Strong nucleosomes of A. thaliana concentrate in centromere regions

Salih, Bilal, Trifonov, Edward N.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2015

Language:

english

File:

PDF, 398 KB

english, 2015

47

Conserved Sequences of Prokaryotic Proteomes and Their Compositional Age

Yehoshua Sobolevsky, Edward N. Trifonov

Journal:

Journal of Molecular Evolution

Year:

2005

Language:

english

File:

PDF, 109 KB

english, 2005

48

Localization of curved DNA and its association with nucleosome phasing in the promoter region of the human estrogen receptor α gene

Yuko Wada-Kiyama, Kentaro Kuwabara, Yasuo Sakuma, Yoshiaki Onishi, Edward N Trifonov, Ryoiti Kiyama

Journal:

Year:

1999

Language:

english

File:

PDF, 558 KB

english, 1999

49

SPIE Proceedings [SPIE Photonics West '95 - San Jose, CA (Wednesday 1 February 1995)] Laser Diodes and Applications - Nonlinear mode interaction in ridge waveguide diode lasers

Rafailov, Edward U., Khalfin, V. B., Livshits, Daniil A., Marinskiy, Dmitriy N., Studenkov, P. V., Trifonov, Alexei S., Urikh, Konstantin I., Linden, Kurt J., Akkapeddi, Prasad R.

Year:

1995

Language:

english

File:

PDF, 203 KB

english, 1995

50

Nucleosomal DNA sequence database

loshikhes, llya, Trifonov, Edward N.

Journal:

Nucleic Acids Research

Year:

1993

Language:

english

File:

PDF, 156 KB

english, 1993

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